No. words: 928; after pruning: 902


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 8.1 (1,1:403)  384  0.00 0.00 0.00  UCD028F_H03_BF473744Sn32P025D09P036H021F1_017.ab1        3   404 (61)  C UCD028R_H03_BF473744Sn32P025D09P036H021R1_017.ab1   (61)   402     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  202 nodes

 103 str. conn. components

Path
    1  C UCD028R_H03_BF473744Sn32P025D09P036H021R1_017.ab1   463 
   93    UCD028F_H03_BF473744Sn32P025D09P036H021F1_017.ab1    34 
  109  C UCD028R_H03_BF473744Sn32P025D09P036H021R1_017.ab1   355 
  145    UCD028F_H03_BF473744Sn32P025D09P036H021F1_017.ab1    86 
  149  C UCD028R_H03_BF473744Sn32P025D09P036H021R1_017.ab1   315 
  317    UCD028F_H03_BF473744Sn32P025D09P036H021F1_017.ab1   258 
  377  C UCD028R_H03_BF473744Sn32P025D09P036H021R1_017.ab1    87 
  425    UCD028F_H03_BF473744Sn32P025D09P036H021F1_017.ab1   366 
  429  C UCD028R_H03_BF473744Sn32P025D09P036H021R1_017.ab1    35 
  437    UCD028F_H03_BF473744Sn32P025D09P036H021F1_017.ab1   378 
Contig length: old 524, new 524

Contig length: old 524, new 524
New start: 0