No. words: 725; after pruning: 699


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 3.7 (1,1:330)  250  2.45 0.00 0.00  UCD028F_C07_BF473744Sn32P025G09P036H021F1_059.ab1        1   286 (0)  C UCD028R_C07_BF473744Sn32P025G09P036H021R1_059.ab1   (108)   331    46 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  126 nodes

 65 str. conn. components

Path
    1  C UCD028R_C07_BF473744Sn32P025G09P036H021R1_059.ab1   439 
  216    UCD028F_C07_BF473744Sn32P025G09P036H021F1_059.ab1   108 
  220  C UCD028R_C07_BF473744Sn32P025G09P036H021R1_059.ab1   220 
Contig length: old 439, new 439

Contig length: old 439, new 439
New start: 0