No. words: 1290; after pruning: 1264


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 10.4 (1,1:608)  572  0.00 0.50 0.00  UCD005F_B05_BF473744TU01P012E05E111F1_045.ab1        1   604 (37)  C UCD005R_B05_BF473744TU01P012E05E111R1_045.ab1   (38)   611     5 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  292 nodes

 148 str. conn. components

Path
    1  C UCD005R_B05_BF473744TU01P012E05E111R1_045.ab1   649 
  114    UCD005F_B05_BF473744TU01P012E05E111F1_045.ab1    73 
  126  C UCD005R_B05_BF473744TU01P012E05E111R1_045.ab1   524 
  142    UCD005F_B05_BF473744TU01P012E05E111F1_045.ab1   101 
  146  C UCD005R_B05_BF473744TU01P012E05E111R1_045.ab1   504 
  202    UCD005F_B05_BF473744TU01P012E05E111F1_045.ab1   161 
  382  C UCD005R_B05_BF473744TU01P012E05E111R1_045.ab1   268 
  410    UCD005F_B05_BF473744TU01P012E05E111F1_045.ab1   369 
  446  C UCD005R_B05_BF473744TU01P012E05E111R1_045.ab1   204 
  526    UCD005F_B05_BF473744TU01P012E05E111F1_045.ab1   485 
  534  C UCD005R_B05_BF473744TU01P012E05E111R1_045.ab1   116 
  546    UCD005F_B05_BF473744TU01P012E05E111F1_045.ab1   505 
Contig length: old 681, new 682

Contig length: old 682, new 682
New start: 0