No. words: 1287; after pruning: 1261


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 10.7 (1,1:606)  570  0.00 0.50 0.00  UCD005F_C05_BF473744TU02P012E05E111F1_043.ab1        1   602 (37)  C UCD005R_C05_BF473744TU02P012E05E111R1_043.ab1   (39)   609     5 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  292 nodes

 148 str. conn. components

Path
    1  C UCD005R_C05_BF473744TU02P012E05E111R1_043.ab1   648 
   69    UCD005F_C05_BF473744TU02P012E05E111F1_043.ab1    27 
   73  C UCD005R_C05_BF473744TU02P012E05E111R1_043.ab1   576 
  117    UCD005F_C05_BF473744TU02P012E05E111F1_043.ab1    75 
  125  C UCD005R_C05_BF473744TU02P012E05E111R1_043.ab1   524 
  137    UCD005F_C05_BF473744TU02P012E05E111F1_043.ab1    95 
  145  C UCD005R_C05_BF473744TU02P012E05E111R1_043.ab1   504 
  201    UCD005F_C05_BF473744TU02P012E05E111F1_043.ab1   159 
  305  C UCD005R_C05_BF473744TU02P012E05E111R1_043.ab1   344 
  321    UCD005F_C05_BF473744TU02P012E05E111F1_043.ab1   279 
  345  C UCD005R_C05_BF473744TU02P012E05E111R1_043.ab1   304 
  357    UCD005F_C05_BF473744TU02P012E05E111F1_043.ab1   315 
  393  C UCD005R_C05_BF473744TU02P012E05E111R1_043.ab1   256 
  525    UCD005F_C05_BF473744TU02P012E05E111F1_043.ab1   483 
  537  C UCD005R_C05_BF473744TU02P012E05E111R1_043.ab1   112 
  545    UCD005F_C05_BF473744TU02P012E05E111F1_043.ab1   503 
  549  C UCD005R_C05_BF473744TU02P012E05E111R1_043.ab1   100 
  585    UCD005F_C05_BF473744TU02P012E05E111F1_043.ab1   543 
  589  C UCD005R_C05_BF473744TU02P012E05E111R1_043.ab1    60 
  593    UCD005F_C05_BF473744TU02P012E05E111F1_043.ab1   551 
  629  C UCD005R_C05_BF473744TU02P012E05E111R1_043.ab1    20 
  633    UCD005F_C05_BF473744TU02P012E05E111F1_043.ab1   591 
Contig length: old 680, new 681

Contig length: old 681, new 681
New start: 0