No. words: 940; after pruning: 914


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 7.4 (1,1:407)  389  0.00 0.00 0.00  UCD028F_D05_BF473744Ta12P025G09P036H021F1_041.ab1        1   405 (62)  C UCD028R_D05_BF473744Ta12P025G09P036H021R1_041.ab1   (65)   408     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  204 nodes

 104 str. conn. components

Path
    1  C UCD028R_D05_BF473744Ta12P025G09P036H021R1_041.ab1   473 
  101    UCD028F_D05_BF473744Ta12P025G09P036H021F1_041.ab1    36 
  105  C UCD028R_D05_BF473744Ta12P025G09P036H021R1_041.ab1   369 
  293    UCD028F_D05_BF473744Ta12P025G09P036H021F1_041.ab1   228 
  373  C UCD028R_D05_BF473744Ta12P025G09P036H021R1_041.ab1   101 
  377    UCD028F_D05_BF473744Ta12P025G09P036H021F1_041.ab1   312 
  409  C UCD028R_D05_BF473744Ta12P025G09P036H021R1_041.ab1    65 
  413    UCD028F_D05_BF473744Ta12P025G09P036H021F1_041.ab1   348 
Contig length: old 532, new 532

Contig length: old 532, new 532
New start: 0