No. words: 918; after pruning: 892


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 8.6 (1,1:411)  388  0.00 0.00 0.24  UCD028F_D02_BF473744Ta16P025D09P036H021F1_010.ab1        1   411 (42)  C UCD028R_D02_BF473744Ta16P025D09P036H021R1_010.ab1   (54)   411     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  204 nodes

 104 str. conn. components

Path
    1  C UCD028R_D02_BF473744Ta16P025D09P036H021R1_010.ab1   465 
  178    UCD028F_D02_BF473744Ta16P025D09P036H021F1_010.ab1   124 
  202  C UCD028R_D02_BF473744Ta16P025D09P036H021R1_010.ab1   264 
  210    UCD028F_D02_BF473744Ta16P025D09P036H021F1_010.ab1   156 
  218  C UCD028R_D02_BF473744Ta16P025D09P036H021R1_010.ab1   248 
  330    UCD028F_D02_BF473744Ta16P025D09P036H021F1_010.ab1   276 
  346  C UCD028R_D02_BF473744Ta16P025D09P036H021R1_010.ab1   120 
  350    UCD028F_D02_BF473744Ta16P025D09P036H021F1_010.ab1   296 
  370  C UCD028R_D02_BF473744Ta16P025D09P036H021R1_010.ab1    96 
  414    UCD028F_D02_BF473744Ta16P025D09P036H021F1_010.ab1   360 
  426  C UCD028R_D02_BF473744Ta16P025D09P036H021R1_010.ab1    40 
  430    UCD028F_D02_BF473744Ta16P025D09P036H021F1_010.ab1   376 
Contig length: old 506, new 507

Contig length: old 507, new 507
New start: 0