No. words: 926; after pruning: 900


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 8.2 (1,1:411)  383  0.00 0.00 0.49  UCD028F_E02_BF473744Ta17P025D09P036H021F1_008.ab1        1   411 (51)  C UCD028R_E02_BF473744Ta17P025D09P036H021R1_008.ab1   (53)   411     3 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  200 nodes

 102 str. conn. components

Path
    1  C UCD028R_E02_BF473744Ta17P025D09P036H021R1_008.ab1   464 
  157    UCD028F_E02_BF473744Ta17P025D09P036H021F1_008.ab1   104 
  189  C UCD028R_E02_BF473744Ta17P025D09P036H021R1_008.ab1   276 
  301    UCD028F_E02_BF473744Ta17P025D09P036H021F1_008.ab1   248 
  333  C UCD028R_E02_BF473744Ta17P025D09P036H021R1_008.ab1   132 
  345    UCD028F_E02_BF473744Ta17P025D09P036H021F1_008.ab1   292 
  369  C UCD028R_E02_BF473744Ta17P025D09P036H021R1_008.ab1    96 
  409    UCD028F_E02_BF473744Ta17P025D09P036H021F1_008.ab1   356 
Contig length: old 514, new 515

Contig length: old 515, new 515
New start: 0