No. words: 941; after pruning: 915


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 8.0 (1,1:417)  389  0.00 0.00 0.24  UCD028F_F02_BF473744Ta18P025D09P036H021F1_006.ab1        5   416 (51)  C UCD028R_F02_BF473744Ta18P025D09P036H021R1_006.ab1   (61)   413     3 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  204 nodes

 104 str. conn. components

Path
    1  C UCD028R_F02_BF473744Ta18P025D09P036H021R1_006.ab1   474 
  213    UCD028F_F02_BF473744Ta18P025D09P036H021F1_006.ab1   156 
  217  C UCD028R_F02_BF473744Ta18P025D09P036H021R1_006.ab1   258 
  309    UCD028F_F02_BF473744Ta18P025D09P036H021F1_006.ab1   252 
  333  C UCD028R_F02_BF473744Ta18P025D09P036H021R1_006.ab1   142 
  353    UCD028F_F02_BF473744Ta18P025D09P036H021F1_006.ab1   296 
  377  C UCD028R_F02_BF473744Ta18P025D09P036H021R1_006.ab1    98 
  421    UCD028F_F02_BF473744Ta18P025D09P036H021F1_006.ab1   364 
Contig length: old 523, new 524

Contig length: old 524, new 524
New start: 0