No. words: 962; after pruning: 936


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.5 (1,1:429)  397  0.23 0.47 0.23  UCD028F_D07_BF473744Ta20P025G09P036H021F1_057.ab1        2   430 (56)  C UCD028R_D07_BF473744Ta20P025G09P036H021R1_057.ab1   (46)   430     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  204 nodes

 104 str. conn. components

Path
    1  C UCD028R_D07_BF473744Ta20P025G09P036H021R1_057.ab1   476 
   99    UCD028F_D07_BF473744Ta20P025G09P036H021F1_057.ab1    52 
  115  C UCD028R_D07_BF473744Ta20P025G09P036H021R1_057.ab1   362 
  179    UCD028F_D07_BF473744Ta20P025G09P036H021F1_057.ab1   132 
  195  C UCD028R_D07_BF473744Ta20P025G09P036H021R1_057.ab1   282 
  203    UCD028F_D07_BF473744Ta20P025G09P036H021F1_057.ab1   156 
  227  C UCD028R_D07_BF473744Ta20P025G09P036H021R1_057.ab1   250 
  319    UCD028F_D07_BF473744Ta20P025G09P036H021F1_057.ab1   272 
  323  C UCD028R_D07_BF473744Ta20P025G09P036H021R1_057.ab1   154 
  383    UCD028F_D07_BF473744Ta20P025G09P036H021F1_057.ab1   336 
Contig length: old 532, new 533

Contig length: old 533, new 533
New start: 0