No. words: 874; after pruning: 848


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 6.9 (1,1:329)  311  0.00 0.00 0.00  UCD028F_D06_BF473744Ta21P025G09P036H021F1_042.ab1        1   329 (101)  C UCD028R_D06_BF473744Ta21P025G09P036H021R1_042.ab1   (114)   330     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  166 nodes

 85 str. conn. components

Path
    1  C UCD028R_D06_BF473744Ta21P025G09P036H021R1_042.ab1   444 
  202    UCD028F_D06_BF473744Ta21P025G09P036H021F1_042.ab1    88 
  206  C UCD028R_D06_BF473744Ta21P025G09P036H021R1_042.ab1   239 
  394    UCD028F_D06_BF473744Ta21P025G09P036H021F1_042.ab1   280 
Contig length: old 544, new 544

Contig length: old 544, new 544
New start: 0