No. words: 434; after pruning: 408


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 2.8 (1,1:170)  157  0.00 0.00 0.61  UCD002F_F02_BF475007LD08P001F01F071F1_015.ab1        9   171 (101)  C UCD002R_F02_BF475007LD08P001F01F071R1_015.ab1   (0)   162     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  80 nodes

 42 str. conn. components

Path
    1    UCD002F_F02_BF475007LD08P001F01F071F1_015.ab1     1 
   16  C UCD002R_F02_BF475007LD08P001F01F071R1_015.ab1   155 
   20    UCD002F_F02_BF475007LD08P001F01F071F1_015.ab1    20 
  130  C UCD002R_F02_BF475007LD08P001F01F071R1_015.ab1    42 
  134    UCD002F_F02_BF475007LD08P001F01F071F1_015.ab1   134 
Contig length: old 272, new 272

Contig length: old 272, new 272
New start: 0