No. words: 1237; after pruning: 1211


Histogram of relative pair offsets, for read pairs with multiple alignments:
49     8
98     6
99     6

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.0 (1,1:561)  531  0.00 0.18 0.00  UCD005F_A11_BF475068AS01P012H06H121F1_095.ab1        1   562 (57)  C UCD005R_A11_BF475068AS01P012H06H121R1_095.ab1   (55)   563     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  280 nodes

 142 str. conn. components

Path
    1  C UCD005R_A11_BF475068AS01P012H06H121R1_095.ab1   618 
   83    UCD005F_A11_BF475068AS01P012H06H121F1_095.ab1    27 
   87  C UCD005R_A11_BF475068AS01P012H06H121R1_095.ab1   532 
  115    UCD005F_A11_BF475068AS01P012H06H121F1_095.ab1    59 
  119  C UCD005R_A11_BF475068AS01P012H06H121R1_095.ab1   500 
  143    UCD005F_A11_BF475068AS01P012H06H121F1_095.ab1    87 
  203  C UCD005R_A11_BF475068AS01P012H06H121R1_095.ab1   416 
  211    UCD005F_A11_BF475068AS01P012H06H121F1_095.ab1   155 
  291  C UCD005R_A11_BF475068AS01P012H06H121R1_095.ab1   328 
  295    UCD005F_A11_BF475068AS01P012H06H121F1_095.ab1   239 
  483  C UCD005R_A11_BF475068AS01P012H06H121R1_095.ab1   136 
  499    UCD005F_A11_BF475068AS01P012H06H121F1_095.ab1   443 
  571  C UCD005R_A11_BF475068AS01P012H06H121R1_095.ab1    48 
  579    UCD005F_A11_BF475068AS01P012H06H121F1_095.ab1   523 
  599  C UCD005R_A11_BF475068AS01P012H06H121R1_095.ab1    20 
  603    UCD005F_A11_BF475068AS01P012H06H121F1_095.ab1   547 
Contig length: old 675, new 675

Contig length: old 675, new 675
New start: 0