No. words: 1274; after pruning: 1248


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.0 (1,1:479)  435  0.21 0.21 0.62  UCD005F_E11_BF475068LD01P012H06H121F1_087.ab1        1   480 (204)  C UCD005R_E11_BF475068LD01P012H06H121R1_087.ab1   (112)   478     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  232 nodes

 118 str. conn. components

Path
    1  C UCD005R_E11_BF475068LD01P012H06H121R1_087.ab1   590 
  312    UCD005F_E11_BF475068LD01P012H06H121F1_087.ab1   202 
  328  C UCD005R_E11_BF475068LD01P012H06H121R1_087.ab1   263 
  436    UCD005F_E11_BF475068LD01P012H06H121F1_087.ab1   326 
  564  C UCD005R_E11_BF475068LD01P012H06H121R1_087.ab1    27 
  568    UCD005F_E11_BF475068LD01P012H06H121F1_087.ab1   458 
Contig length: old 794, new 794

Contig length: old 794, new 794
New start: 0