No. words: 1269; after pruning: 1243


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 9.6 (1,1:470)  443  0.00 0.00 0.21  UCD005F_F11_BF475068LD02P012H06H121F1_085.ab1        2   471 (206)  C UCD005R_F11_BF475068LD02P012H06H121R1_085.ab1   (123)   469     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  230 nodes

 117 str. conn. components

Path
    1  C UCD005R_F11_BF475068LD02P012H06H121R1_085.ab1   592 
  186    UCD005F_F11_BF475068LD02P012H06H121F1_085.ab1    65 
  194  C UCD005R_F11_BF475068LD02P012H06H121R1_085.ab1   399 
  438    UCD005F_F11_BF475068LD02P012H06H121F1_085.ab1   317 
  550  C UCD005R_F11_BF475068LD02P012H06H121R1_085.ab1    43 
  554    UCD005F_F11_BF475068LD02P012H06H121F1_085.ab1   433 
Contig length: old 798, new 798

Contig length: old 798, new 798
New start: 0