No. words: 1297; after pruning: 1271


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.4 (1,1:489)  461  0.20 0.20 0.00  UCD005F_A12_BF475068LD05P012H06H121F1_096.ab1        1   490 (202)  C UCD005R_A12_BF475068LD05P012H06H121R1_096.ab1   (114)   491     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  240 nodes

 122 str. conn. components

Path
    1  C UCD005R_A12_BF475068LD05P012H06H121R1_096.ab1   605 
  187    UCD005F_A12_BF475068LD05P012H06H121F1_096.ab1    72 
  199  C UCD005R_A12_BF475068LD05P012H06H121R1_096.ab1   407 
  219    UCD005F_A12_BF475068LD05P012H06H121F1_096.ab1   104 
  223  C UCD005R_A12_BF475068LD05P012H06H121R1_096.ab1   383 
  443    UCD005F_A12_BF475068LD05P012H06H121F1_096.ab1   328 
  563  C UCD005R_A12_BF475068LD05P012H06H121R1_096.ab1    43 
  579    UCD005F_A12_BF475068LD05P012H06H121F1_096.ab1   464 
Contig length: old 807, new 807

Contig length: old 807, new 807
New start: 0