No. words: 1280; after pruning: 1254


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.4 (1,1:477)  450  0.21 0.21 0.00  UCD005F_B12_BF475068LD06P012H06H121F1_094.ab1        1   478 (201)  C UCD005R_B12_BF475068LD06P012H06H121R1_094.ab1   (122)   479     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  236 nodes

 120 str. conn. components

Path
    1  C UCD005R_B12_BF475068LD06P012H06H121R1_094.ab1   601 
  217    UCD005F_B12_BF475068LD06P012H06H121F1_094.ab1    94 
  221  C UCD005R_B12_BF475068LD06P012H06H121R1_094.ab1   381 
  261    UCD005F_B12_BF475068LD06P012H06H121F1_094.ab1   138 
  469  C UCD005R_B12_BF475068LD06P012H06H121R1_094.ab1   133 
  477    UCD005F_B12_BF475068LD06P012H06H121F1_094.ab1   354 
Contig length: old 802, new 802

Contig length: old 802, new 802
New start: 0