No. words: 1288; after pruning: 1262


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 10.1 (1,1:484)  452  0.21 0.21 0.00  UCD005F_C12_BF475068LD07P012H06H121F1_092.ab1        4   485 (200)  C UCD005R_C12_BF475068LD07P012H06H121R1_092.ab1   (120)   483     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  236 nodes

 120 str. conn. components

Path
    1  C UCD005R_C12_BF475068LD07P012H06H121R1_092.ab1   603 
  190    UCD005F_C12_BF475068LD07P012H06H121F1_092.ab1    72 
  198  C UCD005R_C12_BF475068LD07P012H06H121R1_092.ab1   406 
  262    UCD005F_C12_BF475068LD07P012H06H121F1_092.ab1   144 
  542  C UCD005R_C12_BF475068LD07P012H06H121R1_092.ab1    62 
  550    UCD005F_C12_BF475068LD07P012H06H121F1_092.ab1   432 
  558  C UCD005R_C12_BF475068LD07P012H06H121R1_092.ab1    46 
  566    UCD005F_C12_BF475068LD07P012H06H121F1_092.ab1   448 
Contig length: old 803, new 803

Contig length: old 803, new 803
New start: 0