No. words: 1296; after pruning: 1270


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.6 (1,1:489)  436  2.04 0.20 0.00  UCD005F_D12_BF475068LD08P012H06H121F1_090.ab1        1   490 (201)  C UCD005R_D12_BF475068LD08P012H06H121R1_090.ab1   (114)   491     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  232 nodes

 118 str. conn. components

Path
    1  C UCD005R_D12_BF475068LD08P012H06H121R1_090.ab1   605 
  514    UCD005F_D12_BF475068LD08P012H06H121F1_090.ab1   399 
  538  C UCD005R_D12_BF475068LD08P012H06H121R1_090.ab1    68 
  550    UCD005F_D12_BF475068LD08P012H06H121F1_090.ab1   435 
  562  C UCD005R_D12_BF475068LD08P012H06H121R1_090.ab1    44 
  566    UCD005F_D12_BF475068LD08P012H06H121F1_090.ab1   451 
  574  C UCD005R_D12_BF475068LD08P012H06H121R1_090.ab1    32 
  578    UCD005F_D12_BF475068LD08P012H06H121F1_090.ab1   463 
Contig length: old 806, new 806

Contig length: old 806, new 806
New start: 0