No. words: 380; after pruning: 354


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Rjct: (2)    4   -5.0 -5.0 (1,1:88)   94 10.00 0.00 0.00  UCD012F_E11_BF475068Sn25P025B12P012H121F1_087.ab1       89   228 (8)    UCD012R_E11_BF475068Sn25P025B12P012H121R1_087.ab1        1   140 (4) *
  Worst pair: offset 0 
LLR breakdown: discreps: -7.3 (<20 part: -7.3 (#=14), >20:0.0 (#=0); in HQ: -7.3, out HQ 0.0), match: 2.8  trail: -0.6  total: -5.1   94 10.00 0.00 0.00  UCD012F_E11_BF475068Sn25P025B12P012H121F1_087.ab1       89   228 (8)    UCD012R_E11_BF475068Sn25P025B12P012H121R1_087.ab1        1   140 (4) *

Pass: 4
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-5.0       0        1

Gap   # merges  # failures
 size
 4       0        1

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 2:  2 nodes

 2 str. conn. components

Path
    1    UCD012R_E11_BF475068Sn25P025B12P012H121R1_087.ab1     1 
Contig length: old 144, new 144

Contig 1:  2 nodes

 2 str. conn. components

Path
    1    UCD012F_E11_BF475068Sn25P025B12P012H121F1_087.ab1     1 
Contig length: old 236, new 236