No. words: 350; after pruning: 324


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    3   -1.9 -1.9 (1,1:75)   78  8.93 0.00 0.00  UCD012F_D12_BF475068Sn32P025B12P012H121F1_090.ab1       79   190 (2)    UCD012R_D12_BF475068Sn32P025B12P012H121R1_090.ab1        4   115 (43) *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-1.9       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  32 nodes

 18 str. conn. components

Path
    1    UCD012F_D12_BF475068Sn32P025B12P012H121F1_090.ab1     1 
  116    UCD012R_D12_BF475068Sn32P025B12P012H121R1_090.ab1    41 
  120    UCD012F_D12_BF475068Sn32P025B12P012H121F1_090.ab1   120 
  124    UCD012R_D12_BF475068Sn32P025B12P012H121R1_090.ab1    49 
Contig length: old 233, new 233

Contig length: old 233, new 233
New start: 0