No. words: 1015; after pruning: 989


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.7 (1,1:444)  419  0.00 0.22 0.00  UCD005F_G10_BF475068TU01P012H06H121F1_068.ab1        1   445 (69)  C UCD005R_G10_BF475068TU01P012H06H121R1_068.ab1   (55)   446     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  222 nodes

 113 str. conn. components

Path
    1  C UCD005R_G10_BF475068TU01P012H06H121R1_068.ab1   501 
   84    UCD005F_G10_BF475068TU01P012H06H121F1_068.ab1    28 
   88  C UCD005R_G10_BF475068TU01P012H06H121R1_068.ab1   414 
   92    UCD005F_G10_BF475068TU01P012H06H121F1_068.ab1    36 
  100  C UCD005R_G10_BF475068TU01P012H06H121R1_068.ab1   402 
  156    UCD005F_G10_BF475068TU01P012H06H121F1_068.ab1   100 
  460  C UCD005R_G10_BF475068TU01P012H06H121R1_068.ab1    42 
  472    UCD005F_G10_BF475068TU01P012H06H121F1_068.ab1   416 
Contig length: old 570, new 570

Contig length: old 570, new 570
New start: 0