No. words: 561; after pruning: 535


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 1.8 (1,1:158)  137  0.00 0.00 0.63  UCD013R_H02_BF475068Ta16P025G11P012H121R1_002.ab1        1   158 (150)  C UCD022_E08_BF475068Ta16P025G11P012H121F2_056.ab1   (95)   158     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  76 nodes

 40 str. conn. components

Path
    1  C UCD022_E08_BF475068Ta16P025G11P012H121F2_056.ab1   253 
   99    UCD013R_H02_BF475068Ta16P025G11P012H121R1_002.ab1     4 
  159  C UCD022_E08_BF475068Ta16P025G11P012H121F2_056.ab1    95 
  163    UCD013R_H02_BF475068Ta16P025G11P012H121R1_002.ab1    68 
  167  C UCD022_E08_BF475068Ta16P025G11P012H121F2_056.ab1    87 
  171    UCD013R_H02_BF475068Ta16P025G11P012H121R1_002.ab1    76 
  191  C UCD022_E08_BF475068Ta16P025G11P012H121F2_056.ab1    63 
  215    UCD013R_H02_BF475068Ta16P025G11P012H121R1_002.ab1   120 
  219  C UCD022_E08_BF475068Ta16P025G11P012H121F2_056.ab1    35 
  223    UCD013R_H02_BF475068Ta16P025G11P012H121R1_002.ab1   128 
  231  C UCD022_E08_BF475068Ta16P025G11P012H121F2_056.ab1    23 
  239    UCD013R_H02_BF475068Ta16P025G11P012H121R1_002.ab1   144 
Contig length: old 402, new 403

Contig length: old 403, new 403
New start: 0