No. words: 500; after pruning: 474


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    0   -2.3 -2.3 (1,1:122)   86  8.94 0.00 0.00  UCD013F_A03_BF475068Ta17P025G11P012H121F1_031.ab1        1   123 (127)  C UCD013R_A03_BF475068Ta17P025G11P012H121R1_031.ab1   (127)   123     1 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-2.3       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  34 nodes

 19 str. conn. components

Path
    1  C UCD013R_A03_BF475068Ta17P025G11P012H121R1_031.ab1   250 
  246    UCD013F_A03_BF475068Ta17P025G11P012H121F1_031.ab1   119 
Contig length: old 377, new 377

Contig length: old 377, new 377
New start: 0