No. words: 627; after pruning: 588


Histogram of relative pair offsets, for read pairs with multiple alignments:
36     2
39     2
75     2

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      3

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      3

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)   11   -0.6 -0.6 (1,1:-210)   25  6.25 0.00 0.00  UCD013F_F01_BF475068Td06P025G11P012H121F1_005.ab1        1    32 (86)    UCD022_C07_BF475068Td06P025G11P012H121F2_059.ab1      211   242 (11) *
Merge:(0)    0   -3.5 -3.5 (2,1:-26)  161  1.09 0.54 0.00  UCD022_C07_BF475068Td06P025G11P012H121F2_059.ab1        2   185 (68)  C UCD013R_F01_BF475068Td06P025G11P012H121R1_005.ab1   (71)   185     1 *
  Worst pair: offset 1 
LLR breakdown: discreps: -7.2 (<20 part: -1.0 (#=1), >20:-6.2 (#=2); in HQ: -7.2, out HQ 0.0), match: 4.1  lead: -0.6  total: -3.7  161  1.09 0.54 0.00  UCD022_C07_BF475068Td06P025G11P012H121F2_059.ab1        2   185 (68)  C UCD013R_F01_BF475068Td06P025G11P012H121R1_005.ab1   (71)   185     1 *

Pass: 4
#reads  #contigs (not counting singlets)
    3      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-0.6       1        0
-3.5       1        0

Gap   # merges  # failures
 size
 0       1        0
11       1        0

Offset
  0       1 
  1       1 

Read equivalence class histogram:
    1    3

Chimera merges: 


Contig 1:  94 nodes

 50 str. conn. components

Path
    1  C UCD013R_F01_BF475068Td06P025G11P012H121R1_005.ab1   256 
   91    UCD022_C07_BF475068Td06P025G11P012H121F2_059.ab1    20 
   95  C UCD013R_F01_BF475068Td06P025G11P012H121R1_005.ab1   162 
  188    UCD022_C07_BF475068Td06P025G11P012H121F2_059.ab1   117 
  192  C UCD013R_F01_BF475068Td06P025G11P012H121R1_005.ab1    65 
  228    UCD022_C07_BF475068Td06P025G11P012H121F2_059.ab1   157 
  232  C UCD013R_F01_BF475068Td06P025G11P012H121R1_005.ab1    25 
  244    UCD022_C07_BF475068Td06P025G11P012H121F2_059.ab1   173 
  304    UCD013F_F01_BF475068Td06P025G11P012H121F1_005.ab1    23 
Contig length: old 399, new 399

Contig length: old 399, new 399
New start: 0 
S Change at: 309; seg lengths: entry 1, contig 1