No. words: 504; after pruning: 478


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    0   -1.4 -1.4 (1,1:92)   62  8.60 0.00 1.08  UCD013F_G01_BF475068Td07P025G11P012H121F1_003.ab1        1    93 (160)  C UCD013R_G01_BF475068Td07P025G11P012H121R1_003.ab1   (159)    92     1 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-1.4       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  26 nodes

 15 str. conn. components

Path
    1  C UCD013R_G01_BF475068Td07P025G11P012H121R1_003.ab1   251 
  246    UCD013F_G01_BF475068Td07P025G11P012H121F1_003.ab1    88 
Contig length: old 411, new 411

Contig length: old 411, new 411
New start: 0