No. words: 672; after pruning: 619


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      3

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 2.2 (1,1:172)  151  2.31 0.00 0.00  UCD013R_H01_BF475068Td08P025G11P012H121R1_001.ab1        1   173 (166)  C UCD022_E07_BF475068Td08P025G11P012H121F2_055.ab1   (14)   173     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    1      1
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    
Merge:(0)    1    0.0 0.7 (2,1:264)   65  4.05 0.00 0.00  UCD013R_H01_BF475068Td08P025G11P012H121R1_001.ab1      265   338 (1)    UCD013F_H01_BF475068Td08P025G11P012H121F1_001.ab1        1    74 (72) *

Pass: 4
#reads  #contigs (not counting singlets)
    3      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Read equivalence class histogram:
    3    1

Chimera merges: 


Contig 1:  102 nodes

 54 str. conn. components

Path
    1  C UCD022_E07_BF475068Td08P025G11P012H121F2_055.ab1   187 
   22    UCD013R_H01_BF475068Td08P025G11P012H121R1_001.ab1     8 
   41  C UCD022_E07_BF475068Td08P025G11P012H121F2_055.ab1   147 
   45    UCD013R_H01_BF475068Td08P025G11P012H121R1_001.ab1    31 
  282    UCD013F_H01_BF475068Td08P025G11P012H121F1_001.ab1     4 
  290    UCD013R_H01_BF475068Td08P025G11P012H121R1_001.ab1   276 
  318    UCD013F_H01_BF475068Td08P025G11P012H121F1_001.ab1    40 
  322    UCD013R_H01_BF475068Td08P025G11P012H121R1_001.ab1   308 
  330    UCD013F_H01_BF475068Td08P025G11P012H121F1_001.ab1    52 
Contig length: old 424, new 424

Contig length: old 424, new 424
New start: 0 
S Change at: 277; seg lengths: entry 1, contig 1
S Change at: 336; seg lengths: entry 1, contig 1
S Change at: 342; seg lengths: entry 4, contig 4