No. words: 1138; after pruning: 1112


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.8 (1,1:404)  399  0.00 0.00 0.25  UCD018F_G07_BF483083LD08P028C03C091F1_051.ab1        1   405 (191)  C UCD018R_G07_BF483083LD08P028C03C091R1_051.ab1   (138)   404     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  200 nodes

 102 str. conn. components

Path
    1  C UCD018R_G07_BF483083LD08P028C03C091R1_051.ab1   542 
  430    UCD018F_G07_BF483083LD08P028C03C091F1_051.ab1   292 
Contig length: old 733, new 734

Contig length: old 734, new 734
New start: 0