No. words: 1070; after pruning: 1044


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.4 (1,1:404)  385  1.23 0.25 0.00  UCD018F_H07_BF483083LD09P028C03C091F1_049.ab1        1   405 (122)  C UCD018R_H07_BF483083LD09P028C03C091R1_049.ab1   (137)   406     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  188 nodes

 96 str. conn. components

Path
    1  C UCD018R_H07_BF483083LD09P028C03C091R1_049.ab1   543 
  343    UCD018F_H07_BF483083LD09P028C03C091F1_049.ab1   205 
  359  C UCD018R_H07_BF483083LD09P028C03C091R1_049.ab1   185 
  403    UCD018F_H07_BF483083LD09P028C03C091F1_049.ab1   265 
  415  C UCD018R_H07_BF483083LD09P028C03C091R1_049.ab1   129 
  455    UCD018F_H07_BF483083LD09P028C03C091F1_049.ab1   317 
  467  C UCD018R_H07_BF483083LD09P028C03C091R1_049.ab1    77 
  471    UCD018F_H07_BF483083LD09P028C03C091F1_049.ab1   333 
  511  C UCD018R_H07_BF483083LD09P028C03C091R1_049.ab1    33 
  538    UCD018F_H07_BF483083LD09P028C03C091F1_049.ab1   400 
Contig length: old 665, new 665

Contig length: old 665, new 665
New start: 0