No. words: 1126; after pruning: 1100


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.3 (1,1:395)  384  1.01 0.00 0.00  UCD018F_A08_BF483083LD10P028C03C091F1_064.ab1        1   396 (196)  C UCD018R_A08_BF483083LD10P028C03C091R1_064.ab1   (138)   396     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  194 nodes

 99 str. conn. components

Path
    1  C UCD018R_A08_BF483083LD10P028C03C091R1_064.ab1   534 
  417    UCD018F_A08_BF483083LD10P028C03C091F1_064.ab1   279 
  425  C UCD018R_A08_BF483083LD10P028C03C091R1_064.ab1   110 
  449    UCD018F_A08_BF483083LD10P028C03C091F1_064.ab1   311 
Contig length: old 730, new 730

Contig length: old 730, new 730
New start: 0