No. words: 1057; after pruning: 1031


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 9.9 (1,1:469)  462  0.21 0.00 0.00  UCD018F_E04_BG201235AS01P028B03B091F1_024.ab1        3   470 (54)  C UCD018R_E04_BG201235AS01P028B03B091R1_024.ab1   (65)   468     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  230 nodes

 117 str. conn. components

Path
    1  C UCD018R_E04_BG201235AS01P028B03B091R1_024.ab1   533 
   89    UCD018F_E04_BG201235AS01P028B03B091F1_024.ab1    26 
   93  C UCD018R_E04_BG201235AS01P028B03B091R1_024.ab1   441 
  101    UCD018F_E04_BG201235AS01P028B03B091F1_024.ab1    38 
  105  C UCD018R_E04_BG201235AS01P028B03B091R1_024.ab1   429 
  121    UCD018F_E04_BG201235AS01P028B03B091F1_024.ab1    58 
  129  C UCD018R_E04_BG201235AS01P028B03B091R1_024.ab1   405 
  137    UCD018F_E04_BG201235AS01P028B03B091F1_024.ab1    74 
  149  C UCD018R_E04_BG201235AS01P028B03B091R1_024.ab1   385 
  153    UCD018F_E04_BG201235AS01P028B03B091F1_024.ab1    90 
  185  C UCD018R_E04_BG201235AS01P028B03B091R1_024.ab1   349 
  189    UCD018F_E04_BG201235AS01P028B03B091F1_024.ab1   126 
  309  C UCD018R_E04_BG201235AS01P028B03B091R1_024.ab1   225 
  417    UCD018F_E04_BG201235AS01P028B03B091F1_024.ab1   354 
  421  C UCD018R_E04_BG201235AS01P028B03B091R1_024.ab1   113 
  461    UCD018F_E04_BG201235AS01P028B03B091F1_024.ab1   398 
  465  C UCD018R_E04_BG201235AS01P028B03B091R1_024.ab1    69 
  473    UCD018F_E04_BG201235AS01P028B03B091F1_024.ab1   410 
  477  C UCD018R_E04_BG201235AS01P028B03B091R1_024.ab1    57 
  501    UCD018F_E04_BG201235AS01P028B03B091F1_024.ab1   438 
Contig length: old 587, new 587

Contig length: old 587, new 587
New start: 0