No. words: 1066; after pruning: 1040


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.1 (1,1:467)  458  0.21 0.00 0.21  UCD018F_G04_BG201235AT01P028B03B091F1_020.ab1        1   468 (55)  C UCD018R_G04_BG201235AT01P028B03B091R1_020.ab1   (76)   467     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  230 nodes

 117 str. conn. components

Path
    1  C UCD018R_G04_BG201235AT01P028B03B091R1_020.ab1   543 
  120    UCD018F_G04_BG201235AT01P028B03B091F1_020.ab1    44 
  124  C UCD018R_G04_BG201235AT01P028B03B091R1_020.ab1   420 
  136    UCD018F_G04_BG201235AT01P028B03B091F1_020.ab1    60 
  144  C UCD018R_G04_BG201235AT01P028B03B091R1_020.ab1   400 
  156    UCD018F_G04_BG201235AT01P028B03B091F1_020.ab1    80 
  160  C UCD018R_G04_BG201235AT01P028B03B091R1_020.ab1   384 
  164    UCD018F_G04_BG201235AT01P028B03B091F1_020.ab1    88 
  320  C UCD018R_G04_BG201235AT01P028B03B091R1_020.ab1   224 
  384    UCD018F_G04_BG201235AT01P028B03B091F1_020.ab1   308 
  388  C UCD018R_G04_BG201235AT01P028B03B091R1_020.ab1   156 
  428    UCD018F_G04_BG201235AT01P028B03B091F1_020.ab1   352 
  432  C UCD018R_G04_BG201235AT01P028B03B091R1_020.ab1   112 
  480    UCD018F_G04_BG201235AT01P028B03B091F1_020.ab1   404 
  492  C UCD018R_G04_BG201235AT01P028B03B091R1_020.ab1    52 
  516    UCD018F_G04_BG201235AT01P028B03B091F1_020.ab1   440 
Contig length: old 598, new 599

Contig length: old 599, new 599
New start: 0