No. words: 1059; after pruning: 1033


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 9.8 (1,1:472)  463  0.42 0.00 0.00  UCD018F_H04_BG201235AT02P028B03B091F1_018.ab1        1   471 (50)  C UCD018R_H04_BG201235AT02P028B03B091R1_018.ab1   (65)   473     3 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  232 nodes

 118 str. conn. components

Path
    1  C UCD018R_H04_BG201235AT02P028B03B091R1_018.ab1   538 
  113    UCD018F_H04_BG201235AT02P028B03B091F1_018.ab1    48 
  117  C UCD018R_H04_BG201235AT02P028B03B091R1_018.ab1   422 
  153    UCD018F_H04_BG201235AT02P028B03B091F1_018.ab1    88 
  157  C UCD018R_H04_BG201235AT02P028B03B091R1_018.ab1   382 
  197    UCD018F_H04_BG201235AT02P028B03B091F1_018.ab1   132 
  217  C UCD018R_H04_BG201235AT02P028B03B091R1_018.ab1   322 
  245    UCD018F_H04_BG201235AT02P028B03B091F1_018.ab1   180 
  293  C UCD018R_H04_BG201235AT02P028B03B091R1_018.ab1   246 
  333    UCD018F_H04_BG201235AT02P028B03B091F1_018.ab1   268 
  337  C UCD018R_H04_BG201235AT02P028B03B091R1_018.ab1   202 
  345    UCD018F_H04_BG201235AT02P028B03B091F1_018.ab1   280 
  365  C UCD018R_H04_BG201235AT02P028B03B091R1_018.ab1   174 
  527    UCD018F_H04_BG201235AT02P028B03B091F1_018.ab1   462 
Contig length: old 586, new 586

Contig length: old 586, new 586
New start: 0