No. words: 1331; after pruning: 1305


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 8.2 (1,1:516)  503  0.00 0.39 0.00  UCD018F_A05_BG201235LD01P028B03B091F1_047.ab1        2   514 (165)  C UCD018R_A05_BG201235LD01P028B03B091R1_047.ab1   (135)   517     3 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  252 nodes

 128 str. conn. components

Path
    1  C UCD018R_A05_BG201235LD01P028B03B091R1_047.ab1   652 
  200    UCD018F_A05_BG201235LD01P028B03B091F1_047.ab1    64 
  204  C UCD018R_A05_BG201235LD01P028B03B091R1_047.ab1   449 
  208    UCD018F_A05_BG201235LD01P028B03B091F1_047.ab1    72 
  212  C UCD018R_A05_BG201235LD01P028B03B091R1_047.ab1   441 
  248    UCD018F_A05_BG201235LD01P028B03B091F1_047.ab1   112 
  416  C UCD018R_A05_BG201235LD01P028B03B091R1_047.ab1   237 
  496    UCD018F_A05_BG201235LD01P028B03B091F1_047.ab1   360 
  504  C UCD018R_A05_BG201235LD01P028B03B091R1_047.ab1   149 
  516    UCD018F_A05_BG201235LD01P028B03B091F1_047.ab1   380 
  524  C UCD018R_A05_BG201235LD01P028B03B091R1_047.ab1   129 
  572    UCD018F_A05_BG201235LD01P028B03B091F1_047.ab1   436 
  580  C UCD018R_A05_BG201235LD01P028B03B091R1_047.ab1    73 
  604    UCD018F_A05_BG201235LD01P028B03B091F1_047.ab1   468 
  612  C UCD018R_A05_BG201235LD01P028B03B091R1_047.ab1    41 
  616    UCD018F_A05_BG201235LD01P028B03B091F1_047.ab1   480 
Contig length: old 814, new 815

Contig length: old 815, new 815
New start: 0