No. words: 1250; after pruning: 1224


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 7.9 (1,1:501)  487  0.00 0.20 0.20  UCD018F_B05_BG201235LD02P028B03B091F1_045.ab1        4   501 (73)  C UCD018R_B05_BG201235LD02P028B03B091R1_045.ab1   (177)   499     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  246 nodes

 125 str. conn. components

Path
    1  C UCD018R_B05_BG201235LD02P028B03B091R1_045.ab1   676 
  211    UCD018F_B05_BG201235LD02P028B03B091F1_045.ab1    36 
  215  C UCD018R_B05_BG201235LD02P028B03B091R1_045.ab1   462 
  239    UCD018F_B05_BG201235LD02P028B03B091F1_045.ab1    64 
  243  C UCD018R_B05_BG201235LD02P028B03B091R1_045.ab1   434 
  251    UCD018F_B05_BG201235LD02P028B03B091F1_045.ab1    76 
  259  C UCD018R_B05_BG201235LD02P028B03B091R1_045.ab1   418 
  311    UCD018F_B05_BG201235LD02P028B03B091F1_045.ab1   136 
  315  C UCD018R_B05_BG201235LD02P028B03B091R1_045.ab1   362 
  323    UCD018F_B05_BG201235LD02P028B03B091F1_045.ab1   148 
  335  C UCD018R_B05_BG201235LD02P028B03B091R1_045.ab1   342 
  343    UCD018F_B05_BG201235LD02P028B03B091F1_045.ab1   168 
  351  C UCD018R_B05_BG201235LD02P028B03B091R1_045.ab1   326 
  511    UCD018F_B05_BG201235LD02P028B03B091F1_045.ab1   336 
  515  C UCD018R_B05_BG201235LD02P028B03B091R1_045.ab1   162 
  555    UCD018F_B05_BG201235LD02P028B03B091F1_045.ab1   380 
  559  C UCD018R_B05_BG201235LD02P028B03B091R1_045.ab1   118 
  599    UCD018F_B05_BG201235LD02P028B03B091F1_045.ab1   424 
  603  C UCD018R_B05_BG201235LD02P028B03B091R1_045.ab1    74 
  659    UCD018F_B05_BG201235LD02P028B03B091F1_045.ab1   484 
Contig length: old 748, new 749

Contig length: old 749, new 749
New start: 0