No. words: 1220; after pruning: 1194


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 9.5 (1,1:498)  484  0.00 0.40 0.00  UCD018F_C05_BG201235LD03P028B03B091F1_043.ab1        4   498 (138)  C UCD018R_C05_BG201235LD03P028B03B091R1_043.ab1   (87)   497     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  244 nodes

 124 str. conn. components

Path
    1  C UCD018R_C05_BG201235LD03P028B03B091R1_043.ab1   584 
   99    UCD018F_C05_BG201235LD03P028B03B091F1_043.ab1    14 
  103  C UCD018R_C05_BG201235LD03P028B03B091R1_043.ab1   482 
  113    UCD018F_C05_BG201235LD03P028B03B091F1_043.ab1    27 
  173  C UCD018R_C05_BG201235LD03P028B03B091R1_043.ab1   412 
  185    UCD018F_C05_BG201235LD03P028B03B091F1_043.ab1    99 
  261  C UCD018R_C05_BG201235LD03P028B03B091R1_043.ab1   324 
  265    UCD018F_C05_BG201235LD03P028B03B091F1_043.ab1   179 
  421  C UCD018R_C05_BG201235LD03P028B03B091R1_043.ab1   164 
  437    UCD018F_C05_BG201235LD03P028B03B091F1_043.ab1   351 
  453  C UCD018R_C05_BG201235LD03P028B03B091R1_043.ab1   132 
  465    UCD018F_C05_BG201235LD03P028B03B091F1_043.ab1   379 
  477  C UCD018R_C05_BG201235LD03P028B03B091R1_043.ab1   108 
  497    UCD018F_C05_BG201235LD03P028B03B091F1_043.ab1   411 
  501  C UCD018R_C05_BG201235LD03P028B03B091R1_043.ab1    84 
  509    UCD018F_C05_BG201235LD03P028B03B091F1_043.ab1   423 
Contig length: old 721, new 722

Contig length: old 722, new 722
New start: 0