No. words: 1246; after pruning: 1220


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 7.2 (1,1:507)  492  0.00 0.40 0.00  UCD018F_D05_BG201235LD04P028B03B091F1_041.ab1        4   505 (57)  C UCD018R_D05_BG201235LD04P028B03B091R1_041.ab1   (178)   506     3 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  246 nodes

 125 str. conn. components

Path
    1  C UCD018R_D05_BG201235LD04P028B03B091R1_041.ab1   684 
  244    UCD018F_D05_BG201235LD04P028B03B091F1_041.ab1    67 
  248  C UCD018R_D05_BG201235LD04P028B03B091R1_041.ab1   437 
  280    UCD018F_D05_BG201235LD04P028B03B091F1_041.ab1   103 
  316  C UCD018R_D05_BG201235LD04P028B03B091R1_041.ab1   369 
  340    UCD018F_D05_BG201235LD04P028B03B091F1_041.ab1   163 
  440  C UCD018R_D05_BG201235LD04P028B03B091R1_041.ab1   245 
  552    UCD018F_D05_BG201235LD04P028B03B091F1_041.ab1   375 
  556  C UCD018R_D05_BG201235LD04P028B03B091R1_041.ab1   129 
  648    UCD018F_D05_BG201235LD04P028B03B091F1_041.ab1   471 
  652  C UCD018R_D05_BG201235LD04P028B03B091R1_041.ab1    33 
  664    UCD018F_D05_BG201235LD04P028B03B091F1_041.ab1   487 
Contig length: old 738, new 739

Contig length: old 739, new 739
New start: 0