No. words: 1333; after pruning: 1307


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.3 (1,1:518)  500  0.00 0.58 0.19  UCD018F_E05_BG201235LD05P028B03B091F1_039.ab1        2   519 (157)  C UCD018R_E05_BG201235LD05P028B03B091R1_039.ab1   (137)   520     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  250 nodes

 127 str. conn. components

Path
    1  C UCD018R_E05_BG201235LD05P028B03B091R1_039.ab1   657 
  198    UCD018F_E05_BG201235LD05P028B03B091F1_039.ab1    59 
  202  C UCD018R_E05_BG201235LD05P028B03B091R1_039.ab1   456 
  210    UCD018F_E05_BG201235LD05P028B03B091F1_039.ab1    71 
  218  C UCD018R_E05_BG201235LD05P028B03B091R1_039.ab1   440 
  250    UCD018F_E05_BG201235LD05P028B03B091F1_039.ab1   111 
  426  C UCD018R_E05_BG201235LD05P028B03B091R1_039.ab1   232 
  474    UCD018F_E05_BG201235LD05P028B03B091F1_039.ab1   335 
  486  C UCD018R_E05_BG201235LD05P028B03B091R1_039.ab1   172 
  522    UCD018F_E05_BG201235LD05P028B03B091F1_039.ab1   383 
  526  C UCD018R_E05_BG201235LD05P028B03B091R1_039.ab1   132 
  530    UCD018F_E05_BG201235LD05P028B03B091F1_039.ab1   391 
  534  C UCD018R_E05_BG201235LD05P028B03B091R1_039.ab1   124 
  562    UCD018F_E05_BG201235LD05P028B03B091F1_039.ab1   423 
  566  C UCD018R_E05_BG201235LD05P028B03B091R1_039.ab1    92 
  578    UCD018F_E05_BG201235LD05P028B03B091F1_039.ab1   439 
  586  C UCD018R_E05_BG201235LD05P028B03B091R1_039.ab1    72 
  598    UCD018F_E05_BG201235LD05P028B03B091F1_039.ab1   459 
  606  C UCD018R_E05_BG201235LD05P028B03B091R1_039.ab1    52 
  618    UCD018F_E05_BG201235LD05P028B03B091F1_039.ab1   479 
  630  C UCD018R_E05_BG201235LD05P028B03B091R1_039.ab1    28 
  634    UCD018F_E05_BG201235LD05P028B03B091F1_039.ab1   495 
Contig length: old 814, new 815

Contig length: old 815, new 815
New start: 0