No. words: 1321; after pruning: 1295


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 8.8 (1,1:508)  487  0.00 0.39 0.39  UCD018F_F05_BG201235LD06P028B03B091F1_037.ab1        2   509 (166)  C UCD018R_F05_BG201235LD06P028B03B091R1_037.ab1   (137)   509     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  240 nodes

 122 str. conn. components

Path
    1  C UCD018R_F05_BG201235LD06P028B03B091R1_037.ab1   646 
  172    UCD018F_F05_BG201235LD06P028B03B091F1_037.ab1    34 
  180  C UCD018R_F05_BG201235LD06P028B03B091R1_037.ab1   467 
  184    UCD018F_F05_BG201235LD06P028B03B091F1_037.ab1    46 
  188  C UCD018R_F05_BG201235LD06P028B03B091R1_037.ab1   459 
  196    UCD018F_F05_BG201235LD06P028B03B091F1_037.ab1    58 
  220  C UCD018R_F05_BG201235LD06P028B03B091R1_037.ab1   427 
  224    UCD018F_F05_BG201235LD06P028B03B091F1_037.ab1    86 
  232  C UCD018R_F05_BG201235LD06P028B03B091R1_037.ab1   415 
  252    UCD018F_F05_BG201235LD06P028B03B091F1_037.ab1   114 
  272  C UCD018R_F05_BG201235LD06P028B03B091R1_037.ab1   375 
  288    UCD018F_F05_BG201235LD06P028B03B091F1_037.ab1   150 
  456  C UCD018R_F05_BG201235LD06P028B03B091R1_037.ab1   191 
  476    UCD018F_F05_BG201235LD06P028B03B091F1_037.ab1   338 
  520  C UCD018R_F05_BG201235LD06P028B03B091R1_037.ab1   127 
  524    UCD018F_F05_BG201235LD06P028B03B091F1_037.ab1   386 
  548  C UCD018R_F05_BG201235LD06P028B03B091R1_037.ab1    99 
  568    UCD018F_F05_BG201235LD06P028B03B091F1_037.ab1   430 
  600  C UCD018R_F05_BG201235LD06P028B03B091R1_037.ab1    47 
  604    UCD018F_F05_BG201235LD06P028B03B091F1_037.ab1   466 
Contig length: old 812, new 813

Contig length: old 813, new 813
New start: 0