No. words: 1324; after pruning: 1298


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.5 (1,1:508)  493  0.00 0.59 0.00  UCD018F_G05_BG201235LD07P028B03B091F1_035.ab1        2   508 (171)  C UCD018R_G05_BG201235LD07P028B03B091R1_035.ab1   (135)   510     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  246 nodes

 125 str. conn. components

Path
    1  C UCD018R_G05_BG201235LD07P028B03B091R1_035.ab1   645 
  196    UCD018F_G05_BG201235LD07P028B03B091F1_035.ab1    59 
  200  C UCD018R_G05_BG201235LD07P028B03B091R1_035.ab1   446 
  208    UCD018F_G05_BG201235LD07P028B03B091F1_035.ab1    71 
  216  C UCD018R_G05_BG201235LD07P028B03B091R1_035.ab1   430 
  248    UCD018F_G05_BG201235LD07P028B03B091F1_035.ab1   111 
  424  C UCD018R_G05_BG201235LD07P028B03B091R1_035.ab1   222 
  516    UCD018F_G05_BG201235LD07P028B03B091F1_035.ab1   379 
  524  C UCD018R_G05_BG201235LD07P028B03B091R1_035.ab1   122 
  572    UCD018F_G05_BG201235LD07P028B03B091F1_035.ab1   435 
  584  C UCD018R_G05_BG201235LD07P028B03B091R1_035.ab1    62 
  588    UCD018F_G05_BG201235LD07P028B03B091F1_035.ab1   451 
Contig length: old 815, new 816

Contig length: old 816, new 816
New start: 0