No. words: 1245; after pruning: 1219


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)   11    0.0 9.2 (1,1:498)  481  0.00 0.00 0.20  UCD018F_H05_BG201235LD08P028B03B091F1_033.ab1       12   499 (71)  C UCD018R_H05_BG201235LD08P028B03B091R1_033.ab1   (188)   487     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
11       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  244 nodes

 124 str. conn. components

Path
    1  C UCD018R_H05_BG201235LD08P028B03B091R1_033.ab1   675 
  212    UCD018F_H05_BG201235LD08P028B03B091F1_033.ab1    35 
  220  C UCD018R_H05_BG201235LD08P028B03B091R1_033.ab1   456 
  232    UCD018F_H05_BG201235LD08P028B03B091F1_033.ab1    55 
  236  C UCD018R_H05_BG201235LD08P028B03B091R1_033.ab1   440 
  344    UCD018F_H05_BG201235LD08P028B03B091F1_033.ab1   167 
  348  C UCD018R_H05_BG201235LD08P028B03B091R1_033.ab1   328 
  540    UCD018F_H05_BG201235LD08P028B03B091F1_033.ab1   363 
  552  C UCD018R_H05_BG201235LD08P028B03B091R1_033.ab1   124 
  568    UCD018F_H05_BG201235LD08P028B03B091F1_033.ab1   391 
  580  C UCD018R_H05_BG201235LD08P028B03B091R1_033.ab1    96 
  644    UCD018F_H05_BG201235LD08P028B03B091F1_033.ab1   467 
  648  C UCD018R_H05_BG201235LD08P028B03B091R1_033.ab1    28 
  660    UCD018F_H05_BG201235LD08P028B03B091F1_033.ab1   483 
Contig length: old 746, new 747

Contig length: old 747, new 747
New start: 0