No. words: 1320; after pruning: 1294


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 8.4 (1,1:508)  492  0.00 0.39 0.20  UCD018F_A06_BG201235LD09P028B03B091F1_048.ab1        1   508 (135)  C UCD018R_A06_BG201235LD09P028B03B091R1_048.ab1   (167)   510     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  248 nodes

 126 str. conn. components

Path
    1  C UCD018R_A06_BG201235LD09P028B03B091R1_048.ab1   677 
  232    UCD018F_A06_BG201235LD09P028B03B091F1_048.ab1    63 
  256  C UCD018R_A06_BG201235LD09P028B03B091R1_048.ab1   422 
  544    UCD018F_A06_BG201235LD09P028B03B091F1_048.ab1   375 
  584  C UCD018R_A06_BG201235LD09P028B03B091R1_048.ab1    94 
  600    UCD018F_A06_BG201235LD09P028B03B091F1_048.ab1   431 
  616  C UCD018R_A06_BG201235LD09P028B03B091R1_048.ab1    62 
  628    UCD018F_A06_BG201235LD09P028B03B091F1_048.ab1   459 
Contig length: old 811, new 812

Contig length: old 812, new 812
New start: 0