No. words: 1321; after pruning: 1295


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 8.1 (1,1:509)  492  0.00 0.39 0.20  UCD018F_B06_BG201235LD10P028B03B091F1_046.ab1        2   509 (135)  C UCD018R_B06_BG201235LD10P028B03B091R1_046.ab1   (167)   510     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  248 nodes

 126 str. conn. components

Path
    1  C UCD018R_B06_BG201235LD10P028B03B091R1_046.ab1   677 
  212    UCD018F_B06_BG201235LD10P028B03B091F1_046.ab1    44 
  216  C UCD018R_B06_BG201235LD10P028B03B091R1_046.ab1   462 
  228    UCD018F_B06_BG201235LD10P028B03B091F1_046.ab1    60 
  260  C UCD018R_B06_BG201235LD10P028B03B091R1_046.ab1   418 
  360    UCD018F_B06_BG201235LD10P028B03B091F1_046.ab1   192 
  404  C UCD018R_B06_BG201235LD10P028B03B091R1_046.ab1   274 
  520    UCD018F_B06_BG201235LD10P028B03B091F1_046.ab1   352 
  552  C UCD018R_B06_BG201235LD10P028B03B091R1_046.ab1   126 
  600    UCD018F_B06_BG201235LD10P028B03B091F1_046.ab1   432 
  616  C UCD018R_B06_BG201235LD10P028B03B091R1_046.ab1    62 
  628    UCD018F_B06_BG201235LD10P028B03B091F1_046.ab1   460 
  636  C UCD018R_B06_BG201235LD10P028B03B091R1_046.ab1    42 
  640    UCD018F_B06_BG201235LD10P028B03B091F1_046.ab1   472 
Contig length: old 811, new 812

Contig length: old 812, new 812
New start: 0