No. words: 1333; after pruning: 1307


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 7.1 (1,1:516)  493  0.00 0.78 0.00  UCD018F_C06_BG201235LD11P028B03B091F1_044.ab1        3   513 (136)  C UCD018R_C06_BG201235LD11P028B03B091R1_044.ab1   (166)   518     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  246 nodes

 125 str. conn. components

Path
    1  C UCD018R_C06_BG201235LD11P028B03B091R1_044.ab1   684 
  211    UCD018F_C06_BG201235LD11P028B03B091F1_044.ab1    43 
  219  C UCD018R_C06_BG201235LD11P028B03B091R1_044.ab1   466 
  255    UCD018F_C06_BG201235LD11P028B03B091F1_044.ab1    87 
  263  C UCD018R_C06_BG201235LD11P028B03B091R1_044.ab1   422 
  279    UCD018F_C06_BG201235LD11P028B03B091F1_044.ab1   111 
  483  C UCD018R_C06_BG201235LD11P028B03B091R1_044.ab1   202 
  523    UCD018F_C06_BG201235LD11P028B03B091F1_044.ab1   355 
  555  C UCD018R_C06_BG201235LD11P028B03B091R1_044.ab1   130 
  563    UCD018F_C06_BG201235LD11P028B03B091F1_044.ab1   395 
  571  C UCD018R_C06_BG201235LD11P028B03B091R1_044.ab1   114 
  583    UCD018F_C06_BG201235LD11P028B03B091F1_044.ab1   415 
  595  C UCD018R_C06_BG201235LD11P028B03B091R1_044.ab1    90 
  607    UCD018F_C06_BG201235LD11P028B03B091F1_044.ab1   439 
Contig length: old 816, new 817

Contig length: old 817, new 817
New start: 0