No. words: 1159; after pruning: 1107


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      4

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 6.9 (1,1:377)  363  0.00 0.27 0.00  UCD013F_C06_BG274019Sn25P025D04P012F081F1_044.ab1        1   374 (42)  C UCD013R_C06_BG274019Sn25P025D04P012F081R1_044.ab1   (34)   379     5 *

Pass: 3
#reads  #contigs (not counting singlets)
    1      2
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  1       1 

Pass 4
             Gap  Score    
Merge:(0)   15   -1.9 -1.9 (1,1:-133)   40 10.00 0.00 0.00  UCD011F_C05_BG274019Sn25P025D04P012F081F1_043.ab1       16    75 (32)    UCD011R_C05_BG274019Sn25P025D04P012F081R1_043.ab1      149   208 (15) *

Pass: 4
#reads  #contigs (not counting singlets)
    2      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-1.9       1        0

Gap   # merges  # failures
 size
15       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2
    2    1

Chimera merges: 


Contig 2:  16 nodes

 10 str. conn. components

Path
    1    UCD011R_C05_BG274019Sn25P025D04P012F081R1_043.ab1     1 
  179    UCD011F_C05_BG274019Sn25P025D04P012F081F1_043.ab1    46 
Contig length: old 240, new 240

Contig 1:  186 nodes

 95 str. conn. components

Path
    1  C UCD013R_C06_BG274019Sn25P025D04P012F081R1_044.ab1   413 
   76    UCD013F_C06_BG274019Sn25P025D04P012F081F1_044.ab1    41 
   80  C UCD013R_C06_BG274019Sn25P025D04P012F081R1_044.ab1   334 
   88    UCD013F_C06_BG274019Sn25P025D04P012F081F1_044.ab1    53 
   96  C UCD013R_C06_BG274019Sn25P025D04P012F081R1_044.ab1   318 
  168    UCD013F_C06_BG274019Sn25P025D04P012F081F1_044.ab1   133 
Contig length: old 451, new 451

Contig length: old 240, new 240
New start: 0 
S Change at: 169; seg lengths: entry 1, contig 1

Contig length: old 451, new 451
New start: 0