No. words: 1086; after pruning: 1047


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 4.9 (1,1:373)  357  0.00 0.27 0.00  UCD013F_A07_BG274019Sn30P025D04P012F081F1_063.ab1        4   370 (55)  C UCD013R_A07_BG274019Sn30P025D04P012F081R1_063.ab1   (53)   372     5 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    1    1
    2    1

Chimera merges: 


Contig 1:  180 nodes

 92 str. conn. components

Path
    1  C UCD013R_A07_BG274019Sn30P025D04P012F081R1_063.ab1   425 
   88    UCD013F_A07_BG274019Sn30P025D04P012F081F1_063.ab1    37 
   92  C UCD013R_A07_BG274019Sn30P025D04P012F081R1_063.ab1   334 
   96    UCD013F_A07_BG274019Sn30P025D04P012F081F1_063.ab1    45 
  112  C UCD013R_A07_BG274019Sn30P025D04P012F081R1_063.ab1   314 
  280    UCD013F_A07_BG274019Sn30P025D04P012F081F1_063.ab1   229 
  304  C UCD013R_A07_BG274019Sn30P025D04P012F081R1_063.ab1   122 
  316    UCD013F_A07_BG274019Sn30P025D04P012F081F1_063.ab1   265 
  344  C UCD013R_A07_BG274019Sn30P025D04P012F081R1_063.ab1    82 
  360    UCD013F_A07_BG274019Sn30P025D04P012F081F1_063.ab1   309 
Contig length: old 476, new 476

Contig length: old 476, new 476
New start: 0