No. words: 1060; after pruning: 1021


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 5.3 (1,1:337)  306  2.07 0.00 0.30  UCD013F_C07_BG274019Sn32P025D04P012F081F1_059.ab1        1   338 (66)  C UCD013R_C07_BG274019Sn32P025D04P012F081R1_059.ab1   (75)   337     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    1    1
    2    1

Chimera merges: 


Contig 1:  150 nodes

 77 str. conn. components

Path
    1  C UCD013R_C07_BG274019Sn32P025D04P012F081R1_059.ab1   412 
   84    UCD013F_C07_BG274019Sn32P025D04P012F081F1_059.ab1     9 
  112  C UCD013R_C07_BG274019Sn32P025D04P012F081R1_059.ab1   301 
  124    UCD013F_C07_BG274019Sn32P025D04P012F081F1_059.ab1    49 
  128  C UCD013R_C07_BG274019Sn32P025D04P012F081R1_059.ab1   285 
  132    UCD013F_C07_BG274019Sn32P025D04P012F081F1_059.ab1    57 
  140  C UCD013R_C07_BG274019Sn32P025D04P012F081R1_059.ab1   273 
  144    UCD013F_C07_BG274019Sn32P025D04P012F081F1_059.ab1    69 
  152  C UCD013R_C07_BG274019Sn32P025D04P012F081R1_059.ab1   261 
  403    UCD013F_C07_BG274019Sn32P025D04P012F081F1_059.ab1   329 
Contig length: old 478, new 478

Contig length: old 478, new 478
New start: 0