No. words: 1053; after pruning: 1014


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 6.1 (1,1:368)  354  0.00 0.27 0.00  UCD013F_C05_BG274019Ta17P025D04P012F081F1_043.ab1        1   365 (42)  C UCD013R_C05_BG274019Ta17P025D04P012F081R1_043.ab1   (44)   370     5 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    1    1
    2    1

Chimera merges: 


Contig 1:  180 nodes

 92 str. conn. components

Path
    1  C UCD013R_C05_BG274019Ta17P025D04P012F081R1_043.ab1   414 
   77    UCD013F_C05_BG274019Ta17P025D04P012F081F1_043.ab1    32 
   93  C UCD013R_C05_BG274019Ta17P025D04P012F081R1_043.ab1   322 
  281    UCD013F_C05_BG274019Ta17P025D04P012F081F1_043.ab1   236 
Contig length: old 452, new 452

Contig length: old 452, new 452
New start: 0