No. words: 1076; after pruning: 1037


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 6.1 (1,1:368)  354  0.00 0.27 0.00  UCD013F_D05_BG274019Ta18P025D04P012F081F1_041.ab1        1   365 (60)  C UCD013R_D05_BG274019Ta18P025D04P012F081R1_041.ab1   (45)   370     5 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    1    1
    2    1

Chimera merges: 


Contig 1:  180 nodes

 92 str. conn. components

Path
    1  C UCD013R_D05_BG274019Ta18P025D04P012F081R1_041.ab1   415 
  114    UCD013F_D05_BG274019Ta18P025D04P012F081F1_041.ab1    68 
  122  C UCD013R_D05_BG274019Ta18P025D04P012F081R1_041.ab1   294 
  154    UCD013F_D05_BG274019Ta18P025D04P012F081F1_041.ab1   108 
  158  C UCD013R_D05_BG274019Ta18P025D04P012F081R1_041.ab1   258 
  174    UCD013F_D05_BG274019Ta18P025D04P012F081F1_041.ab1   128 
  186  C UCD013R_D05_BG274019Ta18P025D04P012F081R1_041.ab1   230 
  258    UCD013F_D05_BG274019Ta18P025D04P012F081F1_041.ab1   212 
  266  C UCD013R_D05_BG274019Ta18P025D04P012F081R1_041.ab1   150 
  274    UCD013F_D05_BG274019Ta18P025D04P012F081F1_041.ab1   228 
  362  C UCD013R_D05_BG274019Ta18P025D04P012F081R1_041.ab1    54 
  370    UCD013F_D05_BG274019Ta18P025D04P012F081F1_041.ab1   324 
Contig length: old 471, new 471

Contig length: old 471, new 471
New start: 0