No. words: 1082; after pruning: 1043


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.9 (1,1:379)  367  0.00 0.00 0.26  UCD013F_F05_BG274019Ta20P025D04P012F081F1_037.ab1        1   380 (41)  C UCD013R_F05_BG274019Ta20P025D04P012F081R1_037.ab1   (37)   379     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    1    1
    2    1

Chimera merges: 


Contig 1:  188 nodes

 96 str. conn. components

Path
    1  C UCD013R_F05_BG274019Ta20P025D04P012F081R1_037.ab1   416 
   77    UCD013F_F05_BG274019Ta20P025D04P012F081F1_037.ab1    40 
   81  C UCD013R_F05_BG274019Ta20P025D04P012F081R1_037.ab1   336 
  229    UCD013F_F05_BG274019Ta20P025D04P012F081F1_037.ab1   192 
  241  C UCD013R_F05_BG274019Ta20P025D04P012F081R1_037.ab1   176 
  305    UCD013F_F05_BG274019Ta20P025D04P012F081F1_037.ab1   268 
  341  C UCD013R_F05_BG274019Ta20P025D04P012F081R1_037.ab1    76 
  377    UCD013F_F05_BG274019Ta20P025D04P012F081F1_037.ab1   340 
Contig length: old 457, new 458

Contig length: old 458, new 458
New start: 0