No. words: 1058; after pruning: 1019


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.5 (1,1:359)  348  0.00 0.00 0.28  UCD013F_G05_BG274019Ta21P025D04P012F081F1_035.ab1        1   360 (37)  C UCD013R_G05_BG274019Ta21P025D04P012F081R1_035.ab1   (57)   359     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    1    1
    2    1

Chimera merges: 


Contig 1:  178 nodes

 91 str. conn. components

Path
    1  C UCD013R_G05_BG274019Ta21P025D04P012F081R1_035.ab1   416 
   85    UCD013F_G05_BG274019Ta21P025D04P012F081F1_035.ab1    28 
   93  C UCD013R_G05_BG274019Ta21P025D04P012F081R1_035.ab1   324 
  173    UCD013F_G05_BG274019Ta21P025D04P012F081F1_035.ab1   116 
  241  C UCD013R_G05_BG274019Ta21P025D04P012F081R1_035.ab1   176 
  305    UCD013F_G05_BG274019Ta21P025D04P012F081F1_035.ab1   248 
Contig length: old 453, new 454

Contig length: old 454, new 454
New start: 0